Professional projects

1 minute read

The following are examples of external-facing collateral that I produced through my applications, bioinformatics scientist, and machine learning researcher roles in industry. My data science tools include bash scripts, Python, and R to develop pipelines, wrangle data, and create analysis visualizations. I authored papers, presentations, and posters for these and other projects.

Single-Cell Stranded Total RNA Sequencing$^1$
We adapted a method to be used in our instruments to obtain poly(A) and non-poly(A) RNA at the single-cell level. This provides our customers with a more comprehensive understanding of cellular profiles.
presentation, poster

Processing flow-sorted cells for C1 mRNA-seq applications$^1$
Cryopreservation and flow sorting have become necessary steps upstream of single-cell processing. We evaluated the effect of serum on the recovery of cryopreserved cells prior to processing on the C1 to facilitate customer success.
technical note

Advanta CFTR NGS Library Prep$^1$
Cystic fibrosis profiling is a laboratory test common for new parents in some demographics. We developed a library prepraration assay that increases the scale of samples that can be tested.
presentation, white paper

Juno mRNA-Seq Library Prep$^1$
Bulk RNA-seq is one of the most popular sequencing methods in academic and commercial labs. We developed an assay that increases the scale of samples that can be prepared.

Accelerating throughput with the ProteographTM XT Assay$^2$
Mass spectroscopy is the gold standard method to obtain unbiased proteomics. The nanoparticle system developed at Seer increases the throughput of samples and depth of proteomic coverage.
application note

  1. As an employee of Fluidigm Corporation, now known as Standard Biotools.
  2. As an employee of Seer, Inc.

Disclosure: I am a shareholder of Standard Biotools and Seer, Inc.